rs50531720 SNP Detail

Summary

• ID
  rs50531720
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:55000441 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTGACTGTC TTATTTTCTT
  CATCTTTTTT AAACTGCATC TTCTTTATTT TGTATACTTT TAATTTCAGA ACAAAATAAA
  ACAAACAAAC AAACAAAAAA CCACAATACA CAACACCCAA CCCTACTATT CTGTGGGAGG
  AGATCTTCCT GCCTTAAGGC ACAGAACAGG ATAGAAGATT CTTGTAGATA TGAGAAGAAA
  S
  CCAGGTGGGT CAGGCCAGTC AATGCTTATG TCTTCACTCT GCTGCATTGT GACAAGCACC
  TATGGCTGGA CAGCCAACAT GGAACAGATC ATGAAGACTC AGGCATTGAG AGACAACTCT
  ACAATGGGCT ACATGATGGC CATAAAACAC CTGGAGATCA ACCCTGACCA CCCCATCGTG
  GAGACCCTGT GGCAGAAGGT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss52302072	NES15296887	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C		G	C	C	G		C
ss323309629	CHEV_10_54844151	CHEVERUD	SCREENING_POP	f	SNP										G					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs50531720					SNP	C	C	C	C	C	C	C	C	C	G	G	C	C	G	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52302072	NES15296887	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:55000441 () rs orientation: forward

Symbol	Name	Function Class
Gm46190	predicted gene, 46190	17 bp upstream