rs50533160 SNP Detail

Summary

• ID
  rs50533160
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:25276466 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAAACGGAAT CTCAAAGTGC AGTGTGGTCC AGAGATGCTT
  AGTGACCACT GACCCAGCAG TATGCTTGAT TGGTGGTAAC TTTGTTGCTG GAAAATGATG
  W
  GAGAGCCTAG ACTGTTACAG GGCTCATATG GGTACTAAGA GAACATTTGC TGGACTCCAG
  GTAAAAGTCT CCCATGTGGC TTTTTTCTTC TCTGTTACA                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss146282432	ENSMUSSNP3362850	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
ss325779920	CHEV_19_25373592	CHEVERUD	SCREENING_POP	f	SNP		A	T
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs50533160					SNP	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:25276466 () rs orientation: forward

Symbol	Name	Function Class
Kank1	KN motif and ankyrin repeat domains 1	within coordinates
Rr364352	regulatory region 364352	1476 bp distal
Rr364353	regulatory region 364353	1336 bp proximal
Tssr155675	transcription start site region 155675	1468 bp upstream
Tssr155676	transcription start site region 155676	1484 bp upstream