rs50534416 SNP Detail

Summary

• ID
  rs50534416
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:96011499 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGAGACATG GGGATAATGG
  GATCCTACCT CGTAGAAAAT TCTTTGCACT CCTGAGAATA TGACTCAGGC AGAAATTTGA
  ACCAAGAGGT GGTTGGTGAT ATACTTGGAG AAAAAGGAAC TTTCTATAAA TGGACTGAGT
  GGAAGGCAAG AAATTTACCC ACTGAGCCGT AGCAAGTGCT TCCTCTTGCT TGCAGGATGC
  R
  CTACGGCTGC AGGGTGCTGA TTTTTTCAAT AAATGCACCT CTCCATAGGG AAAAGGGGGA
  TATTATTTTT GGAAGAAACC TGTGATGAGG TAATATTCTT GGGTTTTTAC TGTGAGTTCC
  CCTACACGTC ATTTTCTAGA AAACCCTTCT GGCTATTTCT TTCACATTTG GTGAGCACGT
  TCCCCCCATT AGGATCCAGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss52577716	NES15641558	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs50534416					SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52577716	NES15641558	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:96011499 () rs orientation: forward

Symbol	Name	Function Class
Gm62520	predicted gene, 62520	1262 bp upstream
Gm62625	predicted gene, 62625	795 bp downstream
Rr315387	regulatory region 315387	within coordinates