rs50534665 SNP Detail

Summary

• ID
  rs50534665
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:160210109 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTAAGGATTA AGCTGATCCA
  AGCTTCTGAC GGCTGCAAGG AGATTCAAAC AGGCATAAAG TGCGACCCCA AGTGGCCACG
  GTGCGCAACG GCGCCCTGAA CCGGTTTGTT CTTTGCGGGA GGGAAGGCTT GGATGGCGTC
  TCGGACCCGT GCAGGTCCAG CTAACTGATC CGGCCAAGCC AGGCCTGAAC GCAGGCTGTG
  Y
  GCGGCCTGAA AGCCAGGGCA GACTCCTCTG GAACTATGCA CAGGCCCTCC GACCCCATCT
  TTGGACTCAA CCACTAACCC TCTCTGCTCA CCTTTTCTGA AATTCCATAT GCAAGCCTTC
  CAGGTGTGCT TGTGGGCTAC TCCTCTCAGG AAAGGTCCTG AGCTGGGAAG ATCAGTATTC
  TAAACTGAAA ACGCCAGGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss148147330	ENSMUSSNP625306	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs50534665					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:160210109 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12607	CpG island 12607	within coordinates
Gm57434	predicted gene, 57434	145 bp upstream
Gm74788	predicted gene, 74788	within coordinates
Mafb	MAF bZIP transcription factor B	1124 bp upstream
Rr55988	regulatory region 55988	within coordinates
Tssr21383	transcription start site region 21383	1945 bp downstream
Tssr21384	transcription start site region 21384	1905 bp downstream
Tssr21385	transcription start site region 21385	832 bp downstream
Tssr27240	transcription start site region 27240	1116 bp upstream
Tssr27241	transcription start site region 27241	238 bp upstream