rs50534868 SNP Detail

Summary

• ID
  rs50534868
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:93613115 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCCTCCAC CTTTTACATG
  TGATGATCAC AGCTGTGTGC GATGATTCTC ATGACCACTC TGTATAGGAA GGAGCTCAAA
  CCCAGGGCTA AGCCAGCCCT CTGCCAACCC AGCCACATCT CCAGGCTCTC GGTGCCTCGG
  GTTGATATTT TCTTTCTTCC TAATGAACGA GTTTCAATAC CCACATTGAA GCCAGTTCAA
  K
  TCCTCCCAGA AGTGGTGAAA TTGACCCAAA GAACCACTAC ACTGAGACAA GCAGTGTTTT
  GGCAGGGGCG GTGCTGGCCG AGGGTAACAG GCACAAATAG CAACACTCTT GGTATTCTTC
  TAACAGGCCA GCGTTTAGGA GACAAAGACC TTCAAGGGTG TTGGTGTGAG TGAAGGCTGT
  GTGTGCAGGC ATGAAGAGAT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60510883	NES16531456	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	G	T	G	G	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50534868					SNP	T	T	T	T	T	T	T	T	G	T	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60510883	NES16531456	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:93613115 () rs orientation: forward

Symbol	Name	Function Class
Gm30881	predicted gene, 30881	within coordinates
Rr325602	regulatory region 325602	within coordinates
Rr370142	regulatory region 370142	164 bp upstream
Tssr142206	transcription start site region 142206	161 bp downstream