rs50535132 SNP Detail

Summary

• ID
  rs50535132
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:68259824 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTGAAGAA TGCCAAAGGT
  TAATCTCTAG GATTGAGTTT AGACCTTTAT CCATCCACAG GTGACAACAG TGAGACTGTC
  ATCCAGTTCT GTGCCCCTTC CAAATTCTTG TCTTCAATGT TCAACATACA TGTAGTGGCT
  ATTCCTGGCT GTCAACTTGA CTATATTTGG AATGAACTGC AATCCAGAAT TGGAAGGCTC
  W
  CCAGTGACCC TTATCTGGAG GCTTGCAAAT AGAAGTTTCT GATCTGGATC TTGGTATGGA
  GATCTTGAGG CATAGTGGCA ATGGATTCCA GAAGATTAAA TCTCCGAGTT CAAGGTCATC
  TGGGATTAAA GGTGTGGTGG AACACACATT TAATCTGGGC TACCCCTTCT GCTGGAGACA
  ATATAATGAC ATTGGAAGAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss146487520	ENSMUSSNP4433242	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T	T
ss321154327	CHEV_4_68002621	CHEVERUD	SCREENING_POP	f	SNP				T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs50535132					SNP	A	T	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:68259824 () rs orientation: forward

Symbol	Name	Function Class
Rr376643	regulatory region 376643	within coordinates
Rr376644	regulatory region 376644	1448 bp upstream