rs50535368 SNP Detail

Summary

• ID
  rs50535368
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:55208249 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACCCT TGGAGCTGGG TAGCACAAGA
  K
  CTACTCCTCA TTCAGGCCCT TTTGA                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss52722996	NES15567966	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T		G	T	T	T		T
ss139574402	ENSMUSSNP6222968	ENSEMBL	ENSEMBL_Sanger	f	SNP		T						T
ss324641249	CHEV_14_55589629	CHEVERUD	SCREENING_POP	f	SNP											T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs50535368					SNP	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52722996	NES15567966	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:55208249 () rs orientation: forward

Symbol	Name	Function Class
Mhrt	myosin heavy chain associated RNA transcript	within coordinates
Myh7	myosin, heavy polypeptide 7, cardiac muscle, beta	within coordinates
Rr492380	regulatory region 492380	1987 bp distal
Rr492381	regulatory region 492381	631 bp distal
Tssr125720	transcription start site region 125720	1992 bp downstream
Tssr125721	transcription start site region 125721	1980 bp downstream
Tssr125722	transcription start site region 125722	1532 bp downstream
Tssr125723	transcription start site region 125723	1490 bp downstream
Tssr125724	transcription start site region 125724	1450 bp downstream
Tssr125725	transcription start site region 125725	609 bp downstream
Tssr125726	transcription start site region 125726	585 bp downstream
Tssr125727	transcription start site region 125727	558 bp downstream
Tssr125728	transcription start site region 125728	241 bp upstream
Tssr125729	transcription start site region 125729	1115 bp upstream
Tssr128755	transcription start site region 128755	65 bp upstream
Tssr128756	transcription start site region 128756	27 bp upstream