rs50535472 SNP Detail

Summary

• ID
  rs50535472
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:26013618 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTCACTGGGG AGGAAGCGCA TCAAGTGAAC ACAAGTTGAC
  CCCCTCCCCC AAGACTTTAG CTGCTGGCTA AGGTCATTAC TAGGCATTAG CTTGTCGGAG
  Y
  ATCTCAGACC CTGGCTTTTT TGTCCATGCT TTGGTCATAA CTGACTGTTG GCCTAAACTT
  GACTTCAGCA CTGCTTCTAG AAAACACCTC CTACCACCC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss146382763	ENSMUSSNP2992373	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs50535472					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:26013618 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11338	CpG island 11338	168 bp distal
Gm54107	predicted gene, 54107	249 bp downstream
Nacc2	nucleus accumbens associated 2, BEN and BTB (POZ) domain containing	795 bp upstream
Rr56450	regulatory region 56450	17 bp distal
Tssr23074	transcription start site region 23074	841 bp upstream
Tssr23075	transcription start site region 23075	768 bp upstream