rs50535543 SNP Detail

Summary

• ID
  rs50535543
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127482624 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGGGACTC TGCTCCCATT
  GCCAACTCTA AAATCAGGCC AGGAATTGCA TATATCAGAT GCCATGCAAA ATGTAACATA
  GGTGTGCCAT TTATGGCTCT CTACATAAAA TGTCAATGAA GATGAAATCT TTAGCCTCCA
  ATAAAATTGT TTTTATATAG TAATAATAAT TACAGTTCTT CATGTTGTGG TGACCCCAAC
  M
  ATAAAACCAT GTTCCATAAC TGATTTTGCT AGTTATGAAT GTTGTGTAAT GTCAATATCT
  GTATTTTCTG ATGGTCTTAG GTGACCCACA GGCTGAGAAC CACTGGGTTA AAAGCATTTG
  TTGCTCTCAC AGATTTCAGG TCCCAGACCT TTGGGTGGCT TATAGTCTTC TGTAACTCCA
  GTTCCACGGG CATATGATAT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss135868997	ENSMUSSNP4965747	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs50535543					SNP	C	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127482624 () rs orientation: forward

Symbol	Name	Function Class
Alpk1	alpha-kinase 1	within coordinates
Tssr35586	transcription start site region 35586	423 bp upstream
Tssr35587	transcription start site region 35587	1773 bp downstream