rs50537017 SNP Detail

Summary

• ID
  rs50537017
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:10611856 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGCCTGTTT CTCAAGGATT
  GCGCTATGCC CCACCTGTAG CCTTAACTAC AAATGGTTCA GTACTGCCTG TGCCAGGGAA
  AGGCAACCAC ATCCTTATTT TGCAAAGTTG TTCATAAGCA TCTTGCAAGC CTACCGTTGT
  TTCATAGGTT CTTATGACTA TTGTCGCTAC GCCCACCTTG CACTCAAGTC TTTGTTTCAG
  R
  AGGTTCTTAT GTCTAATGTT TAACTTGTTA TGCTTACATG CTCCTGGTAC CTGGTTTATT
  TTGCCTGCCA ACCCCCACCC CCACCCCCCA CAATTCGGAA ACTACCTACC CCCGATCTAT
  AAAAAACTTG TCTTCCTCAT ATTCAATGCT GACTTCTTAA ACTCCGCCTT AGGGATAGGC
  AGCCCAATGT ACATGAATTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325524303	CHEV_18_10611854	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs50537017					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:10611856 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9702	CpG island 9702	1208 bp distal
Esco1	establishment of sister chromatid cohesion N-acetyltransferase 1	1504 bp upstream
Rr533778	regulatory region 533778	1758 bp distal
Rr533780	regulatory region 533780	1014 bp distal
Rr533781	regulatory region 533781	1720 bp distal
Rr533782	regulatory region 533782	1414 bp distal
Tssr152429	transcription start site region 152429	1740 bp upstream
Tssr152430	transcription start site region 152430	1712 bp upstream
Tssr152431	transcription start site region 152431	1568 bp upstream
Tssr152432	transcription start site region 152432	1544 bp upstream
Tssr152433	transcription start site region 152433	1493 bp upstream