rs50537183 SNP Detail

Summary

• ID
  rs50537183
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:111274912 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAACGAAACC CTAAAACGAC
  TCTGTAGAAA ATATGGCTGC ATGATCCTGT GGCTAGAATT TATGAACTAC AGTTCATTGT
  TTCTTTCAGA GTTAATGCTA TGAATGGAGA AACTGCAGGG ATCTTTAGAT GGTGGCACAG
  GAATTGTGCG GTACTTGTTT TTAGTGCTGT AGGAAACCAG GCAGGTTGGT TTGAGGTAGA
  Y
  GTGTTTAGTG CAAGTGCCAC AGTTAAAGGA GACTCATATT AAATGATACT GTTTACTCAT
  TTTGGAATTC TAGCCAGGCT GCTTGTCATT GGCATTACTG ATCGTCTCAA TTACACTTTA
  GATCATTACT GGCATAACTG TGAACTTCAT CCAAGCAGAT TCTCAAGTCC ATAACATAGA
  GTTGAAAGTT CTCCAGCTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss61316217	NES16925810	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C		C	T		T
ss323473590	CHEV_10_110876107	CHEVERUD	SCREENING_POP	f	SNP							T			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs50537183					SNP	C	C	C	C	C	C	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61316217	NES16925810	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:111274912 () rs orientation: forward

Symbol	Name	Function Class
Rr225746	regulatory region 225746	1783 bp proximal
Rr229875	regulatory region 229875	379 bp proximal