rs50537802 SNP Detail

Summary

• ID
  rs50537802
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr14:79767982 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTGACGTCT CACTAGTAAA
  GATAGAGGGA GGGGCAGGAG GAGCCTGGGC CTCTCATGTT CTCTTTGCTG CTTATTGGCT
  GTGTCCTTAG GCAGGTCACA TTGCTTATGG TCCCAAATTC CTTACCTTTT CAATGAAGTG
  TGTAGTTCTC AGCTATTCCT AGGTGTCTTT TTCAACTCTA AACCCTGTAA TTCTACAAAA
  Y
  TTTTGATTGA TGGGCAGACC ATTGTGCCGT CTACTTTGAT AACCACGAAT TTGACTTCAT
  TTCTGTTGCC TAGCATTCAT TCTAAAACAA TGAAAAACAT CAGAAAAAAT TGTGGTCCAC
  CACACAAAAA TTAGAGTCAT TGCAAGCGGT GGGTCCACTG CTTCTGGTTT CTAGTTTTAA
  TGTGGAGCCT CGCTTTTTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	MSM/Ms
ss139813554	ENSMUSSNP887676	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	MSM/Ms
rs50537802					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:79767982 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Elf1	E74 like ETS transcription factor 1			Intron
				Noncoding-Transcript-Variant
Gm9243	predicted gene 9243			642 bp downstream
Rr496131	regulatory region 496131			within coordinates
Rr496132	regulatory region 496132			815 bp distal
Rr496133	regulatory region 496133			1508 bp proximal
Tssr126802	transcription start site region 126802			131 bp upstream
Tssr126803	transcription start site region 126803			150 bp upstream