rs50538838 SNP Detail

Summary

• ID
  rs50538838
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr13:24558466 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTTTCCAG ACACCTATGT
  GTGGATAATT TGTGGGACCC AGGCTTCCTT TTAACCTGGT GCCTTGCCTC TGAGAAGAAT
  TCCAAAGAGA ACGGGCTAGG TGGATGACCT GCAGTGGCAG ACCATTGGCA GAGGAAGTGG
  ATCTCTGCCC TTGTCTCAAA AGGCACTGAT GAGAAGCGGT GACAGGACTG GAAACAGAGC
  Y
  CACCCTTTCC CTCAATGACC CACATCTTCC AGCTGGGTCC CACAGCCCAC AGGCTCCACA
  CCCCCAGCAA GGCCACTACT ACCTCTGCCC TGCTCCATTG TCTTTACAAA CTCCCACTCA
  GACTCATGGG AAGGTACAAA GTGAGAAGAG TGGCTTTCAT GGTCTAAGAA GCCTGTGGGC
  AGGGTCACAG ACAACAGCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
ss148811277	ENSMUSSNP5067140	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T		C
ss324295896	CHEV_13_24466352	CHEVERUD	SCREENING_POP	f	SNP				T		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
rs50538838					SNP	T	T	T	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:24558466 () rs orientation: forward

Symbol	Name	Function Class
Cmah	cytidine monophospho-N-acetylneuraminic acid hydroxylase	Intron
Gm11342	predicted gene 11342	within coordinates
Rr476038	regulatory region 476038	116 bp proximal
Rr476039	regulatory region 476039	858 bp proximal
Rr476040	regulatory region 476040	1457 bp proximal
Tssr4016	transcription start site region 4016	1567 bp upstream
Tssr118891	transcription start site region 118891	966 bp downstream
Tssr118892	transcription start site region 118892	1551 bp upstream
Tssr118893	transcription start site region 118893	1587 bp upstream
Tssr118894	transcription start site region 118894	1651 bp upstream
Tssr118895	transcription start site region 118895	1685 bp upstream
Tssr121784	transcription start site region 121784	1459 bp downstream
Tssr121785	transcription start site region 121785	1479 bp downstream
Tssr121786	transcription start site region 121786	1539 bp downstream