rs50538931 SNP Detail

Summary

• ID
  rs50538931
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:37513075 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGATTACAT ATACAGAAAG
  TGAGGAGATT CAAAAGGTGC TCCAGGCAAA CGGAGACCAG CAGGGACCAG AGACTACCTG
  TACTTTAGTC CTAAACTTAG TAAACAAAGT GGGCTGCAAA GACTGATTAC CAGTCAAAGG
  CCATCATCGA GGCAGAGACA AATGGATCTC CGAGTGCGAG ATCAGACTGG ACTCCACAGC
  K
  CAGACCAGCC AGGGCTACAC AGTGACACCC TGTCTCAAAG AAAGGCCTTT ACAGAATGAG
  AAAGCATTTT CATGTACAGC TTTAAATAAC TCATGAATTT AATATCGGAC CACATACCAC
  ACGAAAGGGT CTGAAGAGGC CACTAAGGCA TGCCGCTCAA GTCTAATCTG ACCTGAACTC
  TGGAAGTGTT TGGGCTTCAT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	LG/J	SM/J
ss148941450	ENSMUSSNP3509565	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
ss319691758	CHEV_1_37530839	CHEVERUD	SCREENING_POP	f	SNP		T	G
SNP Consensus Information
SNP					Consensus Type	DBA/2J	LG/J	SM/J
rs50538931					SNP	T	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:37513075 () rs orientation: forward

Symbol	Name	Function Class
Mgat4a	mannoside acetylglucosaminyltransferase 4, isoenzyme A	Intron
Rr396000	regulatory region 396000	649 bp upstream
Rr409534	regulatory region 409534	1808 bp distal
Rr409535	regulatory region 409535	291 bp distal
Rr409536	regulatory region 409536	within coordinates
Tssr11302	transcription start site region 11302	1461 bp downstream