rs50539264 SNP Detail

Summary

• ID
  rs50539264
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:52028621 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTCTCCAAT GACCACTCAA
  TTCAAGAGTA TATTGTTCCA TCTCCAAGTA TTCATGGAGT TCCTGTAGTT TCTTTTGTTA
  TTCATTTCTA GTTTATTCCA CTATACTTTA ATAAGACATA AGAAATTATT TTTATTCTTT
  CATATTTGTT AAAGCTTACT TGGTGGGCCA GAATGTTATC TATTCTAGAG GAAGTGAAAT
  Y
  CCATGGGATT GTTTTCTGAA GGGACTCTGG CCCTTGTTGA GCATGGCTCT GGCAGGCCTT
  GCCCTTCCCT CCCATTTCCT CTACCTTTCT AAAAACCTTT GATTAACATG CCTAAAGCTA
  GCCACCAAGG TCTATTCCCT TATTTGGTCA CTTCCTCCTG AGGCTGACTA CCAAGGTCCA
  GCTATCTAAA TATCGAAGTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss137728904	ENSMUSSNP1344015	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs50539264					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:52028621 () rs orientation: forward

Symbol	Name	Function Class
Gm60186	predicted gene, 60186	404 bp downstream
Rr387210	regulatory region 387210	1478 bp downstream
Rr387211	regulatory region 387211	1455 bp upstream