rs50539838 SNP Detail

Summary

• ID
  rs50539838
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:110369086 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGTGTTGA CTGCAGACTG
  GGGGAGTCCG CCTGTCCAGG TTGCAACTTG GAGGGACTTG GCTTGCTCTG AAGAGGCTGG
  TAGTACCTGG TCCTCTCTAG GTGGGCTGGT GTGAGACTCT AACCTTTCAG GCCTATCCAT
  CCTTAGCCCA GCCTCAAACC TGAAATCCTG AATACAGGCG GACTGGCTCT CACCAGCATT
  K
  TGTTCTTTGA GATAAAAGGT TTGCTTTTCC TGTTCTTACT CTTGCTGAGT CCCTCTTCAG
  ATGGCCTCTG AGTCAATCCC AGATCTTGGC AGTATCTTGG GCAGGTGAAA TGTAGGCTTA
  GAATTAAGTT GGAATATACT TTTCTTTCCC AAAGCAATTC AGTGGCCTGT TTCTGTTGTC
  AAGTATATTA ATCCCTATTT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss145647318	ENSMUSSNP356341	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T	G
ss322398785	CHEV_7_117913393	CHEVERUD	SCREENING_POP	f	SNP				T	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs50539838					SNP	G	T	G	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:110369086 () rs orientation: forward

Symbol	Name	Function Class
Ampd3	adenosine monophosphate deaminase 3	within coordinates
B430319F04Rik	RIKEN cDNA B430319F04 gene	534 bp upstream
Cpgi19579	CpG island 19579	646 bp distal
Rr653308	regulatory region 653308	1663 bp distal
Rr653309	regulatory region 653309	958 bp distal
Rr653310	regulatory region 653310	258 bp distal
Rr653311	regulatory region 653311	783 bp proximal
Tssr68503	transcription start site region 68503	1779 bp downstream
Tssr68504	transcription start site region 68504	1752 bp downstream
Tssr68505	transcription start site region 68505	1723 bp downstream
Tssr68506	transcription start site region 68506	1686 bp downstream
Tssr68507	transcription start site region 68507	1245 bp downstream
Tssr68508	transcription start site region 68508	1032 bp downstream
Tssr68509	transcription start site region 68509	747 bp upstream
Tssr74265	transcription start site region 74265	514 bp upstream