rs50539970 SNP Detail

Summary

• ID
  rs50539970
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:72570824 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTTT ATTCCTTTCT CAGGTACCTC
  T
  AAACACTATT GTAATGGCGC CCTCC                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss136623051	ENSMUSSNP6607233	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T
ss323002778	CHEV_9_72511349	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs50539970					SNP	T	T	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:72570824 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22018	CpG island 22018	128 bp distal
Nedd4	neural precursor cell expressed, developmentally down-regulated 4	within coordinates
Rr682797	regulatory region 682797	1050 bp distal
Rr682798	regulatory region 682798	1282 bp proximal
Rr682799	regulatory region 682799	1319 bp proximal
Tssr86018	transcription start site region 86018	1530 bp downstream
Tssr86019	transcription start site region 86019	1130 bp downstream
Tssr86020	transcription start site region 86020	1074 bp downstream
Tssr86021	transcription start site region 86021	1019 bp downstream
Tssr86022	transcription start site region 86022	213 bp upstream
Tssr90495	transcription start site region 90495	272 bp upstream
Tssr90496	transcription start site region 90496	245 bp upstream
Tssr90497	transcription start site region 90497	216 bp upstream