rs50540308 SNP Detail

Summary

• ID
  rs50540308
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:117704607 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGGG CTTGGATTTG CTTAACCAGC
  R
  CAGCCATCCA GCTGTGTGCC CAGCT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss132898453	ENSMUSSNP3309116	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A
ss323869595	CHEV_11_117675095	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs50540308					SNP	A	A	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:117704607 () rs orientation: forward

Symbol	Name	Function Class
Gm20708	predicted gene 20708	within coordinates
Rr460820	regulatory region 460820	1770 bp distal
Rr460821	regulatory region 460821	132 bp proximal
Rr460822	regulatory region 460822	1108 bp proximal
Syngr2	synaptogyrin 2	within coordinates
Tk1	thymidine kinase 1	1745 bp downstream
Tssr106080	transcription start site region 106080	478 bp downstream
Tssr106081	transcription start site region 106081	360 bp downstream
Tssr106082	transcription start site region 106082	317 bp downstream
Tssr106083	transcription start site region 106083	102 bp downstream
Tssr106084	transcription start site region 106084	45 bp downstream
Tssr106085	transcription start site region 106085	15 bp downstream
Tssr106086	transcription start site region 106086	34 bp upstream
Tssr112040	transcription start site region 112040	344 bp upstream
Tssr112041	transcription start site region 112041	315 bp upstream
Tssr112042	transcription start site region 112042	286 bp upstream
Tssr112043	transcription start site region 112043	11 bp upstream