rs50540548 SNP Detail

Summary

• ID
  rs50540548
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:90408612 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACTTAATCT GTGCATGATG
  GCAGTCAGGT CAGGGTGAGG AGGACACACA GCAAAGAACG AAGTGCAGAC TGTGGCCTGG
  GGAACTTCTA GGTCTAGCTA TGAACATATA CTTTTTCCTG CTCTGCATCA AATTTATCTG
  TAAAAGTCGT AAGAAGCAAA GATGGGTGAT GTTTTAGAGG CAGAAGAGAT GACCCCTTAG
  R
  AACAAGGAAA CTCATCTCAG AGAGCTAATG GAAATAGAAA TCATTGATTA TATCTAGAAA
  GATATAAAAT TCCTGGACAT ATAGAAAATG TGGAAGAACT TTGAAAGAAA TTGCATGACA
  AAGACTGGAA AAGAAAAAAA ATAAACAAAA AGACAAAAAA AAACAGGGTG TGCCAACAAA
  CTATTCATTT CACCTGAAAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss62969011	NES17419712	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	A	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs50540548					SNP	G	G	G	G	G	G	G	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62969011	NES17419712	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:90408612 () rs orientation: forward

Symbol	Name	Function Class
Nrxn1	neurexin I	within coordinates
Rr333999	regulatory region 333999	1189 bp proximal
Rr336618	regulatory region 336618	612 bp distal