rs50540551 SNP Detail

Summary

• ID
  rs50540551
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:24361529 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGCATTGC AGATCTAAAC
  AAACTCCCCA CATGAGCCGC TTTTGCCCAT TCCTTCCAAG TACTCCACTT CTGAGCTACA
  ACCCCTTTTT ATTTTTATTT TTTTAAGGTT TAGTTTGTGA TCGAGTCTCC CTGAGTTTCT
  GAGGCTGGTC TTGAACATGT GATCTTCCTT TCTTGGGCCT CACATGTACG CAGATGAGAT
  R
  AAATTTCCTC TCTTATATAA CATATATACT CAGAAAAGAC CTCGAGCTTG TATTGTGTCA
  TTTCTACGGC TTGGCAGGCT CTCAGGGTGT TAACGAACAG TGCAGTCTCC GGGCTGTGGT
  GCTGTAGAGA GGTGAGGGGA CATCCAAGAC AAACTTTTGA AGAGGTGACT GGGACCCTCT
  GATTTCTTCC TCTCTGCTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60982561	NES16150681	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50540551					SNP	A	A	A	A	A	A	G	A	A	A	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60982561	NES16150681	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:24361529 () rs orientation: forward

Symbol	Name	Function Class
Gm4598	predicted gene 4598	within coordinates
Rr643538	regulatory region 643538	195 bp distal
Rr643539	regulatory region 643539	379 bp proximal
Rr643540	regulatory region 643540	642 bp proximal