rs50540834 SNP Detail

Summary

• ID
  rs50540834
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:58971213 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATTTA ATGCATCGGG CTGATTTGCA
  Y
  GCACCTCCTC CATTCTTTCT AGTAT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147203017	ENSMUSSNP4738085	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
ss325637467	CHEV_18_58997795	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs50540834					SNP	T	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:58971213 () rs orientation: forward

Symbol	Name	Function Class
Adamts19	ADAM metallopeptidase with thrombospondin type 1 motif 19	within coordinates
Cpgi10085	CpG island 10085	68 bp distal
Rr538499	regulatory region 538499	1464 bp distal
Tssr151225	transcription start site region 151225	1959 bp downstream
Tssr151226	transcription start site region 151226	1932 bp downstream
Tssr151227	transcription start site region 151227	1802 bp downstream
Tssr151228	transcription start site region 151228	1767 bp downstream
Tssr151229	transcription start site region 151229	1745 bp downstream
Tssr151230	transcription start site region 151230	1390 bp downstream