rs50541277 SNP Detail

Summary

• ID
  rs50541277
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:44341340 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGAGGAGACC AGGGAATTGG GATCTCTCGG TGAGGCTATC
  CCTTGCCCTC TCGTTGCATA GCTGTCCTTA GATATCAATT ATGAGAACAT TCAACACAAA
  M
  CAGGAAGGAC AGACTCCAAG ATAAGGGAAC TGGAATCTGC ACAGTAAAGA GATGAATAAT
  GAGAGGTTCT GCCCTGGGGT TACAGATGAT TGTTAGCTAA                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62288799	NES17220235	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50541277					SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62288799	NES17220235	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:44341340 () rs orientation: forward

Symbol	Name	Function Class
BC151093	cDNA sequence BC151093	446 bp downstream
Ear2	eosinophil-associated, ribonuclease A family, member 2	352 bp downstream
Gm49099	predicted gene, 49099	within coordinates
Rr299065	regulatory region 299065	140 bp distal
Tssr125197	transcription start site region 125197	1218 bp downstream