rs50541617 SNP Detail

Summary

• ID
  rs50541617
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:54076816 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATCTGAGG CTAAACAAAC
  TCTTCCTCCT ACAAGTAGAT CCTTGTCTGC ATTTGATCAC AACCATGAGA ATACTTAGCA
  TTATAGAAGT TGGGGGCAAG AAAGTGAGAG GAAATAAATA AAAAAAAAAC CACTGTGGGG
  TTTTCCAGAG CCGTCATTGG TCTCTTGCAT GTGACATCAT AATGAGACTT TGGAAGCCAA
  Y
  ACCAATAGCA AGCTGCTGCC TAAGGCTGGG TTTGTCCTTG TGCTTCAGAG AGGCAGTTGG
  TTGGTGGGAG GGCAGTTAGA CTCAGTTGCT TCCCACAGAC TTGAGCTTTT TCACAACTTG
  TTGGATCTCG ATATAGTGAG TTTGTTTTCT AGGTTTTCAG TTTGGGTTTT TGGCATTCTT
  TGTTCATTTA TTTTTTATTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62787578	NES17356815	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50541617					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62787578	NES17356815	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:54076816 () rs orientation: forward

Symbol	Name	Function Class
Tssr145231	transcription start site region 145231	33 bp upstream
Tssr145232	transcription start site region 145232	41 bp upstream
Tssr145233	transcription start site region 145233	69 bp upstream