rs50542270 SNP Detail

Summary

• ID
  rs50542270
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:185318575 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCCAAAGC TGCAAGCTTG
  GTCTTACCTG TCTCATGGCA GCCCAAGCTA TGACATGGCA CGTCTCAGGA ATGTGTATCA
  TCTGAATCGG CTGAGTTCAG ACTGCCTTCC TGTCCCACAT TTTTCTGTGT CTGTTGCTCC
  CAACTATTTC GCACTTCCTG TTGCTCCTCC TCCTACTTGC TGAGTGACCA CACACTGCTT
  Y
  CCATGGTCTG TATCAACAAC TAGAGTCTGT TGGTCTTTCC GAGGTGCTGT CTGTGAGCAT
  GTCCCCTTAG CCATCCACCT CTGTGAGAAC CTGCTTTCTG GTCTGATTTG ACTCTTAGCG
  AAGCTAAATG TTCACGCACC GTCTTTGGCA ACCGAAGACT TTACATTTTT GTCTGAAATC
  AGCTGTCCAC ATGTGTATGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss146436955	ENSMUSSNP909244	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss320177546	CHEV_1_187410257	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs50542270					SNP	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:185318575 () rs orientation: forward

Symbol	Name	Function Class
Rr425414	regulatory region 425414	989 bp distal
Rr425415	regulatory region 425415	1268 bp proximal