rs50542611 SNP Detail

Summary

• ID
  rs50542611
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:3843578 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCTAAGGC TACTGGGAAT
  AGTTCTAGGG TCCACAGCAG CCTCTCCCCT TGAGTACCCA AGTTAGACCT GGAAGAACCA
  GCAGAAAACC CAGGATCCAC GACATCTGAC TCCCTACTCC ATCACTTCTT GGGCTAGAGG
  CTCAAATTCT CTGGATTCTG AACCCCAGAG GCCTGTGCTG GGGGCTCCAC TGGGAAGTAT
  R
  GAAAGCTCCT TATTCCTGGC CTGGTGTTAC CTAACACCCA GCCTTGGTTG CCTTGCAGTT
  CCTGTGTCAC CTCTCACCTG CCTGTTCCTG GCTCTTTCTT TCCCTAGGGC TGCAGGGACC
  TTAGCTCCTG GTTTCTGACT CTACATTTGT GGAATGATTT TGCCTCCAGT GAGCCTCTGG
  GTGCCCAGGG CAGGCAGGTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61337741	NES16944835	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50542611					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61337741	NES16944835	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:3843578 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4361	CpG island 4361	1383 bp distal
Gm60243	predicted gene, 60243	within coordinates
Rr403217	regulatory region 403217	1458 bp downstream