rs50542651 SNP Detail

Summary

• ID
  rs50542651
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:20747702 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTTG ACTAGTATGC TAGTATGCCT
  A
  GATCATTTTC CTACACACCT AAGGG                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss148720354	ENSMUSSNP1448209	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss319653794	CHEV_1_20667559	CHEVERUD	SCREENING_POP	f	SNP			A	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs50542651					SNP	A	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:20747702 () rs orientation: forward

Symbol	Name	Function Class
Lincmd1	long intergenic non-protein coding RNA of muscle differentiation 1	within coordinates
Mir206	microRNA 206	1532 bp upstream
Mirc37	microRNA cluster 37, including Mir133b through Mir206	1532 bp proximal