rs50543394 SNP Detail

Summary

• ID
  rs50543394
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:12504201 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCTACTGTG GCAAGGCATA
  GTTACAAGGT TTCATGGATA GGTAAGACAC AGATGATACC ACAAAAAAGA ATGAGAAAAA
  TCCTCCAACA GCTGCCTGCC TGTAAACATT TAGAACAACA GTTAAGAAGT TTGAAGGGAA
  GCACTCTGGG TAAGGTTAAA AAAGACATCC CCAGAGGGCA AGGTTCCTGT GCCAGAGATG
  R
  ACTACTTCCT AACTGTGGTT GATTGCAGAG GCCCCCTGGG GTTTCTAGCC ACCAAGACTA
  CCAGACTACA AGACTACCAG GTTCTACAGC TGAACACAGC CACGTATATC GATTGTAGAC
  CTGAGAACTC CAGCTGGTAT GGAACTGGAA GCTTCCTCCT TGCTGCCTGG CTTTTGCTTT
  GCTAGAAGGC ATTTTTGTAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60571591	NES16043252	PERLEGEN	MM_PANEL2	f	SNP	G		A	A	A	A	A	A	A	A		G	A	G	G		A
ss148678633	ENSMUSSNP28714	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A					A
ss322498738	CHEV_8_12454201	CHEVERUD	SCREENING_POP	f	SNP											A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs50543394					SNP	G	G	A	A	A	A	A	A	A	A	A	G	A	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60571591	NES16043252	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:12504201 () rs orientation: forward

Symbol	Name	Function Class
Gm56835	predicted gene, 56835	within coordinates
Rr381713	regulatory region 381713	within coordinates