rs50543553 SNP Detail

Summary

• ID
  rs50543553
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:113394557 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTCTT TGCTTTCTGA TCCCACCTCT
  R
  CAGCAGGAAA GTGACCCAAA TTAAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	LG/J	SM/J
ss138742448	ENSMUSSNP6261239	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
ss324175504	CHEV_12_114669148	CHEVERUD	SCREENING_POP	f	SNP		G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	LG/J	SM/J
rs50543553					SNP	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:113394557 () rs orientation: forward

Symbol	Name	Function Class
Igh	immunoglobulin heavy chain complex	within coordinates
Ighd4-1	immunoglobulin heavy diversity 4-1	399 bp upstream
Ighg	Immunoglobulin heavy chain (gamma polypeptide)	within coordinates
Ighj1	immunoglobulin heavy joining 1	1104 bp upstream
Ighj2	immunoglobulin heavy joining 2	1422 bp upstream
Ighj3	immunoglobulin heavy joining 3	1805 bp upstream
Tssr115504	transcription start site region 115504	697 bp downstream
Tssr118012	transcription start site region 118012	1804 bp upstream
Tssr118013	transcription start site region 118013	1789 bp upstream
Tssr118014	transcription start site region 118014	1685 bp upstream
Tssr118015	transcription start site region 118015	1589 bp upstream
Tssr118016	transcription start site region 118016	1435 bp upstream
Tssr118017	transcription start site region 118017	1095 bp upstream
Tssr118018	transcription start site region 118018	552 bp upstream
Tssr118019	transcription start site region 118019	496 bp upstream
Tssr118020	transcription start site region 118020	451 bp upstream
Tssr118021	transcription start site region 118021	334 bp upstream
Tssr118022	transcription start site region 118022	305 bp upstream
Tssr118023	transcription start site region 118023	142 bp upstream