rs50545115 SNP Detail

Summary

• ID
  rs50545115
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127584626 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGGGGTGGGG ATAAGAAGTG
  GAGGGTGGGC AGAGCGAGAA TCGCCAACGC TGGAAAGCGC TGAGCTTGCC TGACGCTCTC
  CTCTCCGTAC TTGGTTGCCC CCACTCTCTC TGAAAGATTG GGAACCAGAA AGGCTGCTGA
  GTCGGCAGTG CAGGTCTGCT TTGGTGTAAA ATTCGCGGAC AAATGTCTTC TAAGACACCC
  S
  GTGGGGCCAT GGCAACTGAG GGAGTTGGGC AAGAGAGTAA AATTATCTTT TGTTTCTTCC
  AAGTTTCTCT TCCCCTTCTG CCAGCTCGGT GTCGGGTGTT TGTCAAGAAG AGAAGCTTTT
  TTGCAAAAAT AAAAACTCCC TTCTTGTAAT CACAATCGCT AGCATATCGA CTCAGAGGAA
  CCTCCATTTA CAGCAAATTC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss135871386	ENSMUSSNP3571738	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	G
ss320956932	CHEV_3_127493895	CHEVERUD	SCREENING_POP	f	SNP				G	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs50545115					SNP	C	C	G	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127584626 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13800	CpG island 13800	849 bp distal
Cpgi13801	CpG island 13801	28 bp distal
Gm56817	predicted gene, 56817	720 bp upstream
Gm65225	predicted gene, 65225	within coordinates
Rr584860	regulatory region 584860	1055 bp distal
Rr584861	regulatory region 584861	1158 bp distal
Rr584862	regulatory region 584862	731 bp distal
Rr584863	regulatory region 584863	163 bp distal
Rr584864	regulatory region 584864	within coordinates
Tifa	TRAF-interacting protein with forkhead-associated domain	within coordinates
Tssr31594	transcription start site region 31594	1775 bp downstream
Tssr31595	transcription start site region 31595	1763 bp downstream
Tssr31596	transcription start site region 31596	1730 bp downstream
Tssr31597	transcription start site region 31597	1690 bp downstream
Tssr31598	transcription start site region 31598	1667 bp downstream
Tssr31599	transcription start site region 31599	1168 bp downstream
Tssr31600	transcription start site region 31600	1100 bp downstream
Tssr31601	transcription start site region 31601	1048 bp downstream
Tssr31602	transcription start site region 31602	994 bp downstream
Tssr31603	transcription start site region 31603	976 bp downstream
Tssr31604	transcription start site region 31604	852 bp downstream
Tssr31605	transcription start site region 31605	338 bp downstream
Tssr31606	transcription start site region 31606	152 bp downstream
Tssr31607	transcription start site region 31607	61 bp upstream
Tssr31608	transcription start site region 31608	129 bp upstream
Tssr31609	transcription start site region 31609	180 bp upstream
Tssr31610	transcription start site region 31610	289 bp upstream
Tssr31611	transcription start site region 31611	397 bp upstream
Tssr35598	transcription start site region 35598	1219 bp upstream
Tssr35599	transcription start site region 35599	1137 bp upstream
Tssr35600	transcription start site region 35600	1109 bp upstream
Tssr35601	transcription start site region 35601	1076 bp upstream
Tssr35602	transcription start site region 35602	759 bp upstream