rs50545426 SNP Detail

Summary

• ID
  rs50545426
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:164945949 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAACTTTCTG GGTTTATGAA
  CATGGCCTCC AGCTTGTGAT GCTCCTCCTG CTCTGTCTCC TGAGTGCTGC ACACTGTGCC
  TAGTCTGGGT GCCTGAGGAC ACAGTCGTCT TCTGTCCCGG TCCTGGCTAG CTCCGGAGAG
  GAGAGTGCAA TGGCTTTCCT CAAGGATCTC AGTGACATAA AACATCCTCA CAGTTGTCTT
  R
  ATATAAGACA GGAGCTCAGA TTCACTGCTG TCTGGTGAGA CAACCACATA CAGTGTCAGA
  CAGTGGCCCA GGGTCGCAAC CCCTCATCTC ACGACAACCT TGGAATATGA GTATCATTGA
  ACAAACAAGA AGGCGAAAAC TCAGCCAACT TCAAAACCGT GCCAGTTTGC CCACTCAACA
  TGGCAGGGCT GGCTTCAAAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss145994721	ENSMUSSNP5757515	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs50545426					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:164945949 () rs orientation: forward

Symbol	Name	Function Class
Gm70481	predicted gene, 70481	685 bp upstream
Rr396491	regulatory region 396491	1879 bp upstream
Rr422319	regulatory region 422319	679 bp proximal
Rr422320	regulatory region 422320	892 bp proximal