rs50545630 SNP Detail

Summary

• ID
  rs50545630
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:91052713 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCTAAGAA TTAAGTAGAT
  AGAACCAACT AGCGCTGGTG TAAAGCCTGT TATCTATTAA GATTCAATAC TTTACCCCTG
  CCCTTTCCAT GTCTGTGGGC TGTAAAGTCT AACTCTTGGT TTTGGTCAAG GTGAGCCTCT
  AAGGCTTCCC GATGAAGAAG AGCTGGGGTT TCCAGTGAGA GGCTTGAAAT TCAGGTGTAG
  S
  CTCTCGCTCT TATCCTGACT GAGTTCAGTG AAAAAGCAAT AGGTATTGTT CTTGTTTACA
  ACGTACGCGA AGTCATGCCT TGACATTTTT ACTCTTAACA TCATTTGGAA AGGTTCAAGC
  TGGTACAATT GTAACGCCAG CTCTACTATT CTAGTTTCAA AGCGCCCAGA GTGTTTATTG
  CTGGAAAGTC CAGCAATAGG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61198259	NES16702733	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50545630					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61198259	NES16702733	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:91052713 () rs orientation: forward

Symbol	Name	Function Class
Cxcl2	C-X-C motif chemokine ligand 2	within coordinates
Gm73232	predicted gene, 73232	1650 bp upstream
Rr614420	regulatory region 614420	1661 bp distal
Rr614421	regulatory region 614421	1792 bp distal
Rr614422	regulatory region 614422	971 bp distal
Tssr47224	transcription start site region 47224	1145 bp downstream
Tssr47225	transcription start site region 47225	1043 bp downstream
Tssr47226	transcription start site region 47226	974 bp downstream
Tssr47227	transcription start site region 47227	780 bp downstream
Tssr47228	transcription start site region 47228	717 bp downstream
Tssr47229	transcription start site region 47229	696 bp downstream
Tssr47230	transcription start site region 47230	671 bp downstream
Tssr47231	transcription start site region 47231	641 bp downstream
Tssr47232	transcription start site region 47232	494 bp downstream
Tssr47233	transcription start site region 47233	444 bp downstream
Tssr47234	transcription start site region 47234	409 bp downstream
Tssr47235	transcription start site region 47235	334 bp upstream
Tssr47236	transcription start site region 47236	354 bp upstream
Tssr47237	transcription start site region 47237	403 bp upstream
Tssr47238	transcription start site region 47238	409 bp upstream
Tssr47239	transcription start site region 47239	469 bp upstream
Tssr47240	transcription start site region 47240	481 bp upstream
Tssr47241	transcription start site region 47241	496 bp upstream
Tssr47242	transcription start site region 47242	533 bp upstream
Tssr47243	transcription start site region 47243	556 bp upstream
Tssr47244	transcription start site region 47244	590 bp upstream
Tssr47245	transcription start site region 47245	610 bp upstream
Tssr47246	transcription start site region 47246	661 bp upstream
Tssr47247	transcription start site region 47247	705 bp upstream
Tssr47248	transcription start site region 47248	768 bp upstream
Tssr47249	transcription start site region 47249	838 bp upstream
Tssr47250	transcription start site region 47250	976 bp upstream
Tssr47251	transcription start site region 47251	1040 bp upstream
Tssr47252	transcription start site region 47252	1092 bp upstream
Tssr51810	transcription start site region 51810	1711 bp upstream
Tssr51811	transcription start site region 51811	1657 bp upstream
Tssr51812	transcription start site region 51812	627 bp upstream
Tssr51813	transcription start site region 51813	610 bp upstream
Tssr51814	transcription start site region 51814	353 bp downstream
Tssr51815	transcription start site region 51815	387 bp downstream
Tssr51816	transcription start site region 51816	421 bp downstream