rs50545939 SNP Detail

Summary

• ID
  rs50545939
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:25207504 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCATTATTT TGAATTCATT
  TCGGGACAAC ACCCATATGA TTCACACTTC TGAAATAATT GAATTTGAAA TATTTTAACT
  TTCATTCCAC TCTCTGTCTG TGTGCATATG GGTTAAGGAA GGGAGGGAGG CGCATGCCCT
  GTCATCCTTG TGGAGATCGG AGAAGAGTTT TGTAGAATCG GTTCTCTTTC TGCTTTTTCT
  Y
  TTTCTACTTT GCATGGTAGG CACCTTTACT TTCTTTGTTC CCCTGTAATA GGTTTTTGTA
  TTTAAATACG GACAAGAAAG CACCAGAGGT CTCATTTAAA TAAAAAAAAA AAACCAAGAA
  AGATTTAGTA GAAATACTGC AAATGTCATA ATTATGTGTG GCGCCATTTC CCTCCTTCTG
  CTTTAGATAA TGAAAGAAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61362705	NES16739094	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T	T	C	T	T	T	C		T	T	C	T
ss136234455	ENSMUSSNP4053317	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T						T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50545939					SNP	T	T	T	T	T	T	T	C	T	T	T	C	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61362705	NES16739094	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:25207504 () rs orientation: forward

Symbol	Name	Function Class
Septin7	septin 7	within coordinates
Tssr84136	transcription start site region 84136	1594 bp upstream
Tssr84137	transcription start site region 84137	1619 bp upstream
Tssr84138	transcription start site region 84138	1667 bp upstream