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rs50546188 SNP Detail
Summary
  • ID
    rs50546188
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr1:171041793 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                          ACAAA AAGCAACATT TTTGCTTTTA
    R
    TGTCCGCAGT GCTGGGGAGC CCGGT                                      
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129X1/SvJ
A/J
C57BL/6J
DBA/2J
LG/J
SM/J
ss119997964 PARCsnp_1.01250 PARC_SEQ INBRED f SNP G A
ss146157044 ENSMUSSNP1728050 ENSEMBL ENSEMBL_Sanger f SNP A A A
ss320117240 CHEV_1_173144355 CHEVERUD SCREENING_POP f SNP A A
SNP Consensus Information
SNP Consensus Type
129X1/SvJ
A/J
C57BL/6J
DBA/2J
LG/J
SM/J
rs50546188 SNP A A G A A A
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr1:171041793 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Nr1i3 nuclear receptor subfamily 1, group I, member 3 within coordinates
Rr423242 regulatory region 423242 1052 bp distal
Rr423243 regulatory region 423243 193 bp distal
Tomm40l translocase of outer mitochondrial membrane 40-like 1786 bp downstream
Tssr9983 transcription start site region 9983 217 bp downstream
Tssr9984 transcription start site region 9984 179 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory