rs50546357 SNP Detail

Summary

• ID
  rs50546357
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:46459643 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGAATAGT CAGAGAGCAG
  TGATAGGGCT CAGCAAGTTA AGGGGCTTGC GGCACAAGCC TGGCAACCTG AACCTGAAAC
  CCAGAACCCA AGTAAAGGCA CGAAAGAATG GCTCCACAAA ATTCTCCTCT GACCATCCCA
  GGTGCACTGT GGCACATGTA TCCAAACATG CGTGCACACA TGGCACACAC GCAGCAATTA
  W
  AAATACATAT AGCCTAAGAC TTGGCAGCAT AGAAGAAGCA GTTTCTTTGT CGTTATGCTG
  GAGTGTAAAG AATGGGCATG GTTTGCTTTA ATCGACTGAA CACAGCAATT GGAACCCATG
  GTTATTGAGT CTGGGGAGAT GGCTCAGTAA AAGCACTTGT TCTGCAAGCA CAAAGATCTG
  AGTTTAAATC CTCAAGACCC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	MSM/Ms
ss145697442	ENSMUSSNP5833306	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	MSM/Ms
rs50546357					SNP	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:46459643 () rs orientation: forward

Symbol	Name	Function Class
Mad2l1bp	MAD2L1 binding protein	within coordinates
Rr341809	regulatory region 341809	within coordinates
Rr341810	regulatory region 341810	1758 bp proximal