rs50546986 SNP Detail

Summary

• ID
  rs50546986
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:4268630 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCTGTACAG CCAATACTCT
  AGAGATACAG GCAGAAGGCT CCTGAGTTCC GGGTCCGCCT GGGCTACTTA AGGTTTATTG
  ACTCATCACA GTGCTAACTA GATAAAAGAA ATGAGTCCAG GAACATCTTC AAAAGTTTCA
  GAAGGAGGGC TAGCAAGCAG CTGGAATGAG GTCTGCTGGA CCTAGAATTA AGAGCATTTT
  Y
  AGGGCTGGCC ATGTAGCTCA GTTGGCAGAG TATTTCTGTG GCATACAAAA AGTCCTGGTC
  TCTATCCTCA GCAACACATA AACCTGGAAT GGTGGTGTGC AGCTATCATT CCAGCACTTG
  GTGGGTGGAG ACCAATTGAA AATCAATTTC AACATCATCT TTGGCTGAGA GATAATTGGA
  GACCAGCCTG GGCCTGTCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61075537	NES16047874	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	C	C	T	C	C	C	C	C	C	T	C
ss148555732	ENSMUSSNP2677898	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50546986					SNP	T	T	C	C	C	C	C	T	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61075537	NES16047874	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:4268630 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20046	CpG island 20046	1187 bp distal
Prr36	proline rich 36	1171 bp upstream
Rr658993	regulatory region 658993	828 bp distal
Tssr80256	transcription start site region 80256	1627 bp upstream
Tssr80257	transcription start site region 80257	1587 bp upstream
Tssr80258	transcription start site region 80258	1504 bp upstream
Tssr80259	transcription start site region 80259	1462 bp upstream
Tssr80260	transcription start site region 80260	1378 bp upstream
Tssr80261	transcription start site region 80261	1329 bp upstream
Tssr80262	transcription start site region 80262	1127 bp upstream