rs50547246 SNP Detail

Summary

• ID
  rs50547246
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:41341024 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATCCACAGA AGGATGTCCA
  GACAATGGGA CACTGTGGAT GACAGCGTGG GACATGTGAA GTAAAAGAGG GGCAGGTCCT
  GACGGAGGCA CTGTGGCAGT CCGGAAGGAT GTATTTGCTC AGGTCTTAAT TTGACAATCA
  GCTGTTTACT TTTGAATGAT CAAGAGCCCT GTTTGTCTCC TTAGCAGTGG ACTGTTGATC
  M
  TTTTCCACTC ATGGTCATGA AGCAACTGAT AGGAGGTTCT AGAGCTGCAG ATGTTGAAAG
  ATCATTTTTG TTGTTTGCTA ACAAAGACAT TCCTGTGAGC AGGCAGTTTG GTTGTTTTTT
  TTGTTTTTTG TTTTTGTTTT TTTTTTTTGG TTTTTTGTTT CTTTGTTTGT TTTTAAGTCT
  CCTTTGAAAG ATTCTTAAAC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60601045	NES16305995	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50547246					SNP	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60601045	NES16305995	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:41341024 () rs orientation: forward

Symbol	Name	Function Class
Rr662620	regulatory region 662620	596 bp distal
Slc7a2	solute carrier family 7 (cationic amino acid transporter, y+ system), member 2	Intron
Tssr76994	transcription start site region 76994	1341 bp downstream
Tssr76995	transcription start site region 76995	124 bp downstream
Tssr76996	transcription start site region 76996	68 bp downstream
Tssr76997	transcription start site region 76997	29 bp upstream
Tssr76998	transcription start site region 76998	414 bp upstream
Tssr76999	transcription start site region 76999	1538 bp upstream
Tssr81068	transcription start site region 81068	883 bp upstream