rs50547657 SNP Detail

Summary

• ID
  rs50547657
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:100894370 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGGTCACCA GCCCCTTCCT
  TTACATACAC TTAAACCGGA TTCCTTTTAC TGGAGCATCC TCTTCAATAA CCACGCTGGA
  AGTGGTTAGG GTTAGGGTTA GTGAACGCTG GAAGCGTTAG CAGTTGGTGC ACCGGCTTCA
  GCTCTATGTA TACGGATGCA ATGAATGAGG TCCGAAGCCA CATACACAAG TTCTTACAGC
  R
  AAAGCTGCCA GCAACCTAAG CCCCTAGTCT AGGTTGCCTT TAGTTTGTGT ACAGATAGAC
  TGCAAGTTTC CTAATGAAAT CTATGCTGTA AGATTCTCCT CTGAGGAGCT GATTCAGACA
  GATACAGACA CCCACAGCCA AACAGTGCAT AGAGTCTCGG GATTCTTATG GAAGAATAGG
  ACCCCAAAGG GGATAGGAAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52685853	NES15521439	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50547657					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52685853	NES15521439	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:100894370 () rs orientation: forward

Symbol	Name	Function Class
Cenph	centromere protein H	1812 bp downstream
Rr269996	regulatory region 269996	770 bp distal