rs50547975 SNP Detail

Summary

• ID
  rs50547975
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:59292451 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACATAAGAA AGGGAAAAGA
  ATTTGTAGGA ATAAAACTAT AACAGTAATA CCCACAAGTC ATTTCACACC TGCATTCAAT
  GAGCAAACTG TGGTGAGGAT TAAAGCTTCC CAATGTGGGA TGTGTGGTGG GTAATTCTTG
  CTGAATAGTC TGCTAGTGTC TTGGAATTAA GCATCCTTAA TGAATATCAT TTGAGGAAAT
  K
  TCAGTGCACT TTGAAACTTG TTGTTTACAC CATTGCTTCC TTGACCTTGT CAAAGTGGGA
  CTATTTATAT TTTTACTTAT GCACATTTAC ATGCATAAAA ATCTTTGAAC ATGTTTAGTT
  GAAATTGAAG CAACCAAATT TCATAACTAG GACAACTGAT TTTCCTTTCT TTACATTTTT
  TACCATTAAG TTTTTTGATT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62816003	NES17358088	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50547975					SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62816003	NES17358088	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:59292451 () rs orientation: forward

Symbol	Name	Function Class
Pdzph1	PDZ and pleckstrin homology domains 1	within coordinates
Rr392790	regulatory region 392790	54 bp upstream