rs50548092 SNP Detail

Summary

• ID
  rs50548092
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:89389734 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TATTA GCTGGGGACC AAGCATTCAG
  R
  CACACAAGCT AATGGGGACA TTTCA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss145482094	ENSMUSSNP2529377	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs50548092					SNP	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:89389734 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20792	CpG island 20792	1916 bp proximal
Gm64159	predicted gene, 64159	within coordinates
Nod2	nucleotide-binding oligomerization domain containing 2	within coordinates
Rr190931	regulatory region 190931	within coordinates
Rr401049	regulatory region 401049	437 bp downstream
Tssr78664	transcription start site region 78664	528 bp downstream
Tssr82363	transcription start site region 82363	742 bp upstream
Tssr82364	transcription start site region 82364	722 bp upstream
Tssr82365	transcription start site region 82365	1173 bp downstream
Tssr82366	transcription start site region 82366	1185 bp downstream