rs50548949 SNP Detail

Summary

• ID
  rs50548949
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:57412955 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A CAACAGGTGA GGCTCATCTC ATCCCTAGGG GACTCTTTCT
  TACCTTCTGG AAGCATCGCT GCACCGACAG GGAGAGAACA GCACTTCCTC CCCACCCCCG
  C
  CCCGCCCCGC CCCGCCCCGC CTCGCTCTGC TCCTGCTACT CCGCTTGAAG CACCCCCTCT
  CCATCTCGCA CTCAGAGGAA ATCCCTTTGC GTCTTGACCC C                    
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss145810076	ENSMUSSNP7049313	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs50548949					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:57412955 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9396	CpG island 9396	within coordinates
D17Mit252	DNA segment, Chr 17, Massachusetts Institute of Technology 252	1845 bp proximal
Gm11110	predicted gene 11110	13 bp upstream
Rr529280	regulatory region 529280	620 bp distal
Rr529281	regulatory region 529281	within coordinates
Rr529282	regulatory region 529282	1990 bp proximal
Tnfsf9	tumor necrosis factor (ligand) superfamily, member 9	within coordinates
Tssr145375	transcription start site region 145375	534 bp downstream
Tssr145376	transcription start site region 145376	677 bp upstream
Tssr148901	transcription start site region 148901	7 bp upstream