rs50548969 SNP Detail

Summary

• ID
  rs50548969
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:64831919 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGTATAAAA GATCAGTTTT
  CTCTGTTTTA CCATAAGTAT TGGGTATTAA CAAAATTCTA TCTAATTTAT ACCATGTATC
  ATCACTGTGT CCATAAAGTA ATTCTGAGAG CTGACATCTA GGGATATCTA AGAAGTTATT
  GACCATCTCA AGCTGAGAAA ACCATAAAAT TCAGTCCAAG TAAGATATGC TTCTACTGTG
  Y
  ACCTGATTGA AGTCTTGCCT CTGTGACTGG AGCATCCAAA AGATCCTGGC TTTGTTGTAC
  AAGCGAGCCT TTAACTTTTT ATTCTATGTA AATATGTTAT TGGAGAAAAC AAATATGAAC
  TTTTATCTAA AAAAATGAAA CTAGATCTAA ATATTTACAG TGTCTGGGTG TCAAACCTTT
  TGACTTTGAG ATATGACAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61635098	NES17583728	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	T	C	T	C	C	C	T	C	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50548969					SNP	C	C	C	T	C	T	C	C	C	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61635098	NES17583728	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:64831919 () rs orientation: forward

Symbol	Name	Function Class
Dnajb6-ps	DnaJ heat shock protein family (Hsp40) member B6, pseudogene	1166 bp upstream
Gm59451	predicted gene, 59451	1020 bp downstream