rs50549809 SNP Detail

Summary

• ID
  rs50549809
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:80141992 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTTGA GCACACAGAG GATTAGGTTT
  Y
  TCTCAGGCTT AAGGGATAGA GCTCA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
ss148216323	ENSMUSSNP3928095	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C		C
ss325030593	CHEV_15_80088221	CHEVERUD	SCREENING_POP	f	SNP				C		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
rs50549809					SNP	C	C	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:80141992 () rs orientation: forward

Symbol	Name	Function Class
Atf4	activating transcription factor 4	250 bp downstream
Cpgi7369	CpG island 7369	1438 bp distal
Rr505934	regulatory region 505934	52 bp proximal
Tssr132203	transcription start site region 132203	1713 bp downstream
Tssr132204	transcription start site region 132204	1442 bp downstream
Tssr132205	transcription start site region 132205	871 bp downstream
Tssr132206	transcription start site region 132206	656 bp downstream
Tssr132207	transcription start site region 132207	605 bp downstream
Tssr135433	transcription start site region 135433	1927 bp upstream
Tssr135434	transcription start site region 135434	250 bp upstream