rs50549964 SNP Detail

Summary

• ID
  rs50549964
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:130555535 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAACATTTAT GACATTAGAC TCTGACTTCT TGGGTGACTG
  TAGTCCTCGA TGTTGGCTTT TAATGGCGTC TCCAGCCTTC TATGTCATTG TGTGAACATT
  Y
  CAAGGAGAGC AGGCCATAGC CAGCGTCATT ACATACGAGT ACAATTGCAT AGAAAGATTC
  TGGGATGTAG CCAGGCCACT AATGTCCGAG GAATGACAC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61080230	NES16598221	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C	T	C	T	C	T	C	C	C	C	C
ss135899377	ENSMUSSNP1711430	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C						T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50549964					SNP	C	C	C	C	C	C	T	C	T	C	T	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61080230	NES16598221	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:130555535 () rs orientation: forward

Symbol	Name	Function Class
Gm42997	predicted gene 42997	within coordinates
Gm43522	predicted gene 43522	834 bp downstream
Rr585207	regulatory region 585207	403 bp distal
Rr585208	regulatory region 585208	940 bp distal