rs50551061 SNP Detail

Summary

• ID
  rs50551061
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:55150716 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGTC TCCATCGTTT GTTTCTTGGG
  G
  GCTGCAGGCC ATTGCGGTTT AAAAA                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss139573040	ENSMUSSNP4818715	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss324640831	CHEV_14_55532096	CHEVERUD	SCREENING_POP	f	SNP			G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs50551061					SNP	G	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:55150716 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6478	CpG island 6478	within coordinates
Slc22a17	solute carrier family 22 (organic cation transporter), member 17	127 bp upstream
Tssr128658	transcription start site region 128658	928 bp upstream
Tssr128659	transcription start site region 128659	801 bp upstream
Tssr128660	transcription start site region 128660	217 bp upstream
Tssr128661	transcription start site region 128661	175 bp upstream
Tssr128662	transcription start site region 128662	131 bp upstream