rs50551107 SNP Detail

Summary

• ID
  rs50551107
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:68260466 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCAGGCGAG CTAAAAATTT
  CAAGCCTTTT TCTGAGAGTT CTTTTCCTGA ATGTTCTCTA AGTGTATAAA CATATGTTAG
  AGCACTTGTT TGTTTATTCA CTTGCCGCTC TATTTTTGTT GTTACTGAGG CTACAGAGCT
  AATTACTCAG AGCTAAACAA AAAATAGTAA TAAGGTTTTC TTTTTCCAAT TTTTTTTTCA
  W
  CTCCTATTGG CAGAATTCTG ACCCCAGCCC TCTTCAAGGA CACTGTTTAG GTCCATTCTC
  CTCCAAGAAA ATGCATGTTA AATTGCAATC AACTGGTAAC AGTTTTGGTT GTTAGACAAC
  CCTAAGATAT ACGTTTATTG TTCTTTTAAA TTTATCTATT TTATATTTAT TTATTTATTT
  ATTTATTTAA TACTCCAGAT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	LG/J	SM/J
ss146487549	ENSMUSSNP4714235	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
ss321154328	CHEV_4_68003263	CHEVERUD	SCREENING_POP	f	SNP		A	T
SNP Consensus Information
SNP					Consensus Type	DBA/2J	LG/J	SM/J
rs50551107					SNP	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:68260466 () rs orientation: forward

Symbol	Name	Function Class
Rr376643	regulatory region 376643	335 bp downstream
Rr376644	regulatory region 376644	806 bp upstream