rs50551185 SNP Detail

Summary

• ID
  rs50551185
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:115873368 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A ATGCAGGAAG ACCCAGCCTT CTCCCAGCCG CCCAGCCAAA
  TGGATTCCTT ATGGCTAGAA GTCATCCTTC CCGTAGGCAG GAACTGTGGG CAGACTCCCG
  Y
  GCCTGCTCAC CCAAGCTGTG CTGAAAGCTG GCTGCACAGA AGGACATGGA GGAGCAGCCA
  AGGCTCCCCA GGCCTAGCCC AGAATCAGCA TGAGGATCCT G                    
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss147277416	ENSMUSSNP5634834	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs50551185					SNP	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:115873368 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14625	CpG island 14625	1017 bp proximal
Faah	fatty acid amide hydrolase	within coordinates
Rr91642	regulatory region 91642	1968 bp distal
Rr99792	regulatory region 99792	within coordinates
Tssr38488	transcription start site region 38488	359 bp downstream
Tssr38489	transcription start site region 38489	1094 bp upstream
Tssr42842	transcription start site region 42842	1485 bp downstream
Tssr42843	transcription start site region 42843	1683 bp downstream
Tssr42844	transcription start site region 42844	1852 bp downstream
Tssr42845	transcription start site region 42845	1871 bp downstream
Tssr42846	transcription start site region 42846	1916 bp downstream
Tssr42847	transcription start site region 42847	1949 bp downstream
Tssr42848	transcription start site region 42848	1965 bp downstream
Tssr42849	transcription start site region 42849	1982 bp downstream