rs50552579 SNP Detail

Summary

• ID
  rs50552579
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:69331664 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACCATAGAT AAGTATTTAT
  CTCTGGACTC TTGAGTGCTT TCTGTGATCA GTTAACTGGA GAGGCATTTT TAAAATGCAT
  TGTGTTAGAT GCCCCTTTGC CCCTTTATTA ATCTCATAAA ATCTTGAAGT TCTCTGAAAG
  TTCCAGGTAG CAGTGCAGGT CGGTTTGGAG TCTGATCAAA TGACTTTTAA GCTTGAAATT
  Y
  GGCTGTGTGG CTATTCTAGA TAAAACACAA AGCATTTCTA CACTTCTGTT TTTATGTCTT
  TTATGCCACT GCCATGTTTT AAAATTAGAG CTTCCTATAT ACTTCTTTCA GAGGTTGGCC
  ATATTCTAGT TATGTGCCCT GGAGTATCTC TGCCATTTCC AAAGTTGTTC AGTGGGGTTT
  CGCTCTTGCC AACTTTCAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60627406	NES16288144	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50552579					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60627406	NES16288144	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:69331664 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20405	CpG island 20405	1401 bp proximal
D8Mit26	DNA segment, Chr 8, Massachusetts Institute of Technology 26	332 bp proximal
Gm64236	predicted gene, 64236	within coordinates
Lpl	lipoprotein lipase	1543 bp upstream
Rr664453	regulatory region 664453	1838 bp distal
Rr664454	regulatory region 664454	174 bp distal
Rr664455	regulatory region 664455	999 bp proximal
Rr664456	regulatory region 664456	1490 bp proximal
Tssr77601	transcription start site region 77601	1536 bp upstream
Tssr77602	transcription start site region 77602	1619 bp upstream
Tssr77603	transcription start site region 77603	1638 bp upstream
Tssr77604	transcription start site region 77604	1702 bp upstream
Tssr77605	transcription start site region 77605	1711 bp upstream