rs50552920 SNP Detail

Summary

• ID
  rs50552920
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:177808965 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGGG CTTTAAGTTC TACTGAAACG
  A
  TTATTTTAGT CAGATTAATG GTTGT                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss146351704	ENSMUSSNP1740654	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs50552920					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:177808965 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1085	CpG island 1085	1689 bp proximal
Gm69850	predicted gene, 69850	within coordinates
Rr14372	regulatory region 14372	1165 bp distal
Rr25806	regulatory region 25806	within coordinates
Rr29061	regulatory region 29061	1435 bp proximal
Rr396636	regulatory region 396636	1645 bp upstream