rs50553185 SNP Detail

Summary

• ID
  rs50553185
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:115569468 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGCGCACT TCTCTTGATG
  ACCGTTGGAG AATGGATCTG AGATGCTGAT AGGTGCGTCC TCTATCCTGG TGGAGCCCAC
  GTCCCCCTGG CAGAGAGGGC AGCATTGGGG TACACTGAAG GTGTAGATGG ACCTCTCGCA
  GTGCCTGAAT TTAATTAGAG GCTTCCCAGC TCCTTCGAAG TGCATCCCGA ATGATTGCCA
  R
  GCCACCAAGA CAGGTTTCAG GAGACTTCCT TTTCCTCATT ATACAGCTGG CTAACTCACA
  CCACCTGAGT AACCTAATCT ACAGTGACAT CATCCTGGGT GGAGGCTTTA GACACCAAGC
  TAGGTAGATT AACCAGTAAC CAGGCTGCCC CTGCTGGACT CTTAAAGAGC TAGTTCTTAT
  TTGAGCTGGC TTACCAAATT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60931171	NES16195610	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50553185					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60931171	NES16195610	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:115569468 () rs orientation: forward

Symbol	Name	Function Class
Mkrn2os	makorin, ring finger protein 2, opposite strand	within coordinates
Tssr62513	transcription start site region 62513	4 bp upstream
Tssr62514	transcription start site region 62514	3 bp downstream
Tssr62515	transcription start site region 62515	23 bp downstream
Tssr62516	transcription start site region 62516	36 bp downstream
Tssr62517	transcription start site region 62517	64 bp downstream