rs50553244 SNP Detail

Summary

• ID
  rs50553244
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:124785415 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAACCCTTA AAGCACACAT
  CCACCAGACA GCGTGCCCAC TCGTAGTTCC ATTACTCAGG AGGCTGAAGC AGGAGGATGA
  AGGACTAAGG CTTCAGCAAC CTAGGGAGCC GCAGGGGACA GTAGTCTCAA TCCCTACATT
  CTCCTGAACA CAGGAGCAGG AGTTCAGGAA GGGTGTCAAG GCCGCTTACT GATCTTAGGG
  S
  CTCAGGAATG ACTAGCTCAG GCAGAGAGAG CAAAGGTCTC CAGTGGAGAA GTCTACACAC
  ACACACACAC ACACACACAC ACACACACAC ACACAGAATC CAAGGCGATG ACGTCATCAA
  AGGGTTAATT CTAGTCTGGG ATGGGGGGGA GGGTGGGGCA CGCAGCTGTC AGGTGGCTTT
  GGAAAAATAA ACTGCTGAAG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60941243	NES16184864	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	G	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50553244					SNP	C	C	C	C	C	C	C	C	C	C	G	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60941243	NES16184864	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:124785415 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17971	CpG island 17971	223 bp proximal
Gm67886	predicted gene, 67886	1574 bp downstream
Spsb2	splA/ryanodine receptor domain and SOCS box containing 2	225 bp upstream
Tssr58846	transcription start site region 58846	206 bp upstream
Tssr58847	transcription start site region 58847	446 bp upstream
Tssr58848	transcription start site region 58848	484 bp upstream
Tssr58849	transcription start site region 58849	1272 bp upstream